PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005477
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 208aa    MW: 22657.4 Da    PI: 7.0121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005477genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-11161185226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C +++ t tCk+Gd+CkF H+
  Cla005477 161 GEKDCAHYMLTRTCKFGDSCKFDHP 185
                7889********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011159186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507159187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5160186IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4165184IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MANQLHGCNS VYGAAPATAT AAPSLPTTYS SSRSLSDIVS GRYLLSDSLS SGLSIKHSVT  60
DRGTSMYSTQ KEALMLSAAD IVPRTSHLVS QFSWPGSDVA AALDSVVSGI KRSSDVLYDQ  120
TVLGSYNTLG QSEAWYTSNS FAKRPRFEST SNLPVYPQRP GEKDCAHYML TRTCKFGDSC  180
KFDHPIWVPE GGIPDWKEVT VFCYLLYL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-149LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-149LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148293.11e-123PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q34e-49C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0A0K4691e-122A0A0A0K469_CUCSA; Uncharacterized protein
STRINGXP_004148293.11e-122(Cucumis sativus)
STRINGXP_004159177.11e-125(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-51floral homeotic protein (HUA1)