PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005507

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 156aa MW: 16830.3 Da PI: 8.0476

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005507	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146	1e-45	17	117	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfp++qp+kf vhk+FGasnv+kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg+i+ lq++++ l+++la+++++ Cla005507 17 PCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQREVDALQQQLAMTQAQ 116 7***********************************************************************************************9988 PP DUF260 101 l 101 l Cla005507 117 L 117 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.04	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-45	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAASEMMMKK GGSGPPPCAA CKLLRRRCAP DCVFAPYFPS DQPHKFSSVH KVFGASNVSK 60 LLQELPEHQR SDAVSSMVYE ANARIRDPVY GCVGTISCLQ REVDALQQQL AMTQAQLVQL 120 KMGQFASTSQ ASSSTDDLLP PPPNINVGAS PSLWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-50	17	131	11	125	LOB family transfactor Ramosa2.1
5ly0_B	4e-50	17	131	11	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681800	1e-86	LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBank	LN713255	1e-86	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022930643.1	1e-79	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	4e-56	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0A0K5P4	6e-76	A0A0A0K5P4_CUCSA; Uncharacterized protein
STRING	XP_004139827.1	9e-77	(Cucumis sativus)
STRING	XP_004169335.1	9e-77	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-52	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]