PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005623
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 176aa    MW: 19465.8 Da    PI: 10.5128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005623genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-184494256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g+
  Cla005623 44 TYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAARTIKGH 94
               69****998.**********854...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.48444101IPR001471AP2/ERF domain
SMARTSM003801.3E-3644107IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2144102IPR016177DNA-binding domain
PfamPF008476.8E-124494IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3244102IPR001471AP2/ERF domain
CDDcd000181.18E-3145103No hitNo description
PRINTSPR003671.5E-104556IPR001471AP2/ERF domain
PRINTSPR003671.5E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEDPLHRFQF HSQSSSSSSS DIKNCIKEKN SKKVKLENDG KHPTYRGVRM RQWGKWVSEI  60
REPKKKSRIW LGTFSTPEMA ARAHDVAART IKGHSAYLNF PELAHRLPRP ASSSPKDIRA  120
AAAKAASFST NNLLDSTHDD DLNSAAKSDL NLNRSPSSAV AAKSSGEIDD LPRSVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17411011172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-150LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-150LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448820.17e-84PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ74e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9LYD32e-45DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9SUK87e-46ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A1S3BK052e-82A0A1S3BK05_CUCME; ethylene-responsive transcription factor ERF039
STRINGXP_008448820.13e-83(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]