PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005646

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GRAS

Protein Properties

Length: 778aa MW: 85532.8 Da PI: 5.5917

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005646	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.5	1.3e-100	416	777	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ ++ ++ pp+ ++ +++ ++ a+k+fse+sP+++f ++t+Nqa Cla005646 416 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLL--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQA 513 679*********************************************9998..6777788888888999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.....rv 196 +lea++ +r+Hi+Dfdi+ G+QW++++q+L+ R++g+ sl+iT+++sp++++ el ++e+L++fA+ +g++fef+v+ ++++l+ +++ r Cla005646 514 LLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGALSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVV---NFDSLNQNSFplpfpRA 610 ***************************************************************************8...77777766665566667 PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +++Ea+aVn+ l + ++++ l+s +L+++k+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k+Er+ll+++i++ Cla005646 611 SENEAIAVNFPLWCSS--NQPAMLPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDAVNKIERFLLQPRIES 703 77*****95554..45777777....*****************************************887.7899************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v + ++ e++ W+ + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr Cla005646 704 TVLGRLRA----PERMPLWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 777 99998....999*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.947	389	757	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-98	416	777	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MRGISFHFQG KGELEFSAAF SSSSPICSGF AEKWVKKGEE QQEQELEEEQ EEGLSYFVLP 60 NNEPTSVLHM RSPSPPTSAS TLSSSFGGGG GGGGCVPSLP PETPAVEPVA GTGVGNAIFP 120 GGLERCGVGL EDLESMWSET AGPEQSFLRW IAGDVVEDPS LGSKSVLHNG NIPFDLDGNA 180 GIGMVDQGSE FDTGAGNVLA NINPNLSFPL AACAGFSDVN VNNKSLSRST CGGVVNYKSS 240 SLGLNNRHGN FNVQNPIFTG SLENLLVPVS GMIYPQQLQP FESPDEKPQN LNTHVLLNQH 300 QQPQNPSFFV PLTFGQQEQQ LQPQLKRHNS SGGLDPNPNG QIPKVPFMDP GNEIFLRNHQ 360 LQVLQQQQQQ QLGYPPGLQF LPQQKAMSPK PKVVGLGDEM AYHNPPQQQH QQHALLDQLY 420 KAAELVGTGN FSHAQGILAR LNHQLSPVGK PLQRAAFYFK EALQLLLLLN NPVNPPPPRC 480 PTPFDVIFKM GAYKVFSEIS PLIQFVNFTC NQALLEALDD VDRIHIVDFD IGFGAQWASF 540 MQELSLRNRG ALSLKITAFA SPSTHHPIEL GLMRENLTQF ANDIGISFEF EVVNFDSLNQ 600 NSFPLPFPRA SENEAIAVNF PLWCSSNQPA MLPSLLRFIK QLSPKIVVSL DRGCDRSDLP 660 FPQHMLQALQ SYINLLESLD AINMNSDAVN KIERFLLQPR IESTVLGRLR APERMPLWKT 720 LFASAGFTPV TFSNFTETQA ECVAKRTSVR GFHVEKRQAS LVLCWQRREL ISASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MRGISFHFQG KGELEFSAAF SSSSPICSGF AEKWVKKGEE QQEQELEEEQ EEGLSYFVLP  60
NNEPTSVLHM RSPSPPTSAS TLSSSFGGGG GGGGCVPSLP PETPAVEPVA GTGVGNAIFP  120
GGLERCGVGL EDLESMWSET AGPEQSFLRW IAGDVVEDPS LGSKSVLHNG NIPFDLDGNA  180
GIGMVDQGSE FDTGAGNVLA NINPNLSFPL AACAGFSDVN VNNKSLSRST CGGVVNYKSS  240
SLGLNNRHGN FNVQNPIFTG SLENLLVPVS GMIYPQQLQP FESPDEKPQN LNTHVLLNQH  300
QQPQNPSFFV PLTFGQQEQQ LQPQLKRHNS SGGLDPNPNG QIPKVPFMDP GNEIFLRNHQ  360
LQVLQQQQQQ QLGYPPGLQF LPQQKAMSPK PKVVGLGDEM AYHNPPQQQH QQHALLDQLY  420
KAAELVGTGN FSHAQGILAR LNHQLSPVGK PLQRAAFYFK EALQLLLLLN NPVNPPPPRC  480
PTPFDVIFKM GAYKVFSEIS PLIQFVNFTC NQALLEALDD VDRIHIVDFD IGFGAQWASF  540
MQELSLRNRG ALSLKITAFA SPSTHHPIEL GLMRENLTQF ANDIGISFEF EVVNFDSLNQ  600
NSFPLPFPRA SENEAIAVNF PLWCSSNQPA MLPSLLRFIK QLSPKIVVSL DRGCDRSDLP  660
FPQHMLQALQ SYINLLESLD AINMNSDAVN KIERFLLQPR IESTVLGRLR APERMPLWKT  720
LFASAGFTPV TFSNFTETQA ECVAKRTSVR GFHVEKRQAS LVLCWQRREL ISASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-33	434	777	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	0.0	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448862.1	0.0	PREDICTED: scarecrow-like protein 6
Swissprot	O81316	1e-125	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A1S3BKP2	0.0	A0A1S3BKP2_CUCME; scarecrow-like protein 6
STRING	XP_008448862.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-127	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]