PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005676

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 188aa MW: 20777.7 Da PI: 8.4966

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005676	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	189.1	2.1e-58	22	184	6	161
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksnvekeesast 94 sseq+Cyv+Cn C+t+lavsvP +slfk vtvrCG+C++ll vn+ + ll+++++++ + ++ lee +++ n + n +++++ Cla005676 22 SSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGM-LLPSSNQFHG-FAHStpnflspnthnFLEEISNSNPNPNPNFLMNQAEGI 119 79***************************************998765.5566665433.322213454444333333333333333333333333222 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 ++ + +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn + Cla005676 120 ---DLTMATRVANDLPRQPPsINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNVS 184 ...2345888999999999989******************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-59	22	186	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-6	133	180	IPR009071	High mobility group box domain
CDD	cd00084	1.46E-4	147	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSSSSIPNTF SQVPPPLLPP PSSEQLCYVH CNICDTVLAV SVPCSSLFKR VTVRCGYCAN 60 LLPVNMCGGM LLPSSNQFHG FAHSTPNFLS PNTHNFLEEI SNSNPNPNPN FLMNQAEGID 120 LTMATRVAND LPRQPPSINR PPEKRQRVPS AYNRFIKEEI QRIKAANPDI SHREAFSAAA 180 KNVSRYII

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	1e-35	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	1e-35	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150647.1	1e-107	PREDICTED: protein YABBY 4 isoform X2
Swissprot	A2X7Q3	2e-53	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	2e-53	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A0A0L1N8	1e-105	A0A0A0L1N8_CUCSA; Uncharacterized protein
STRING	XP_004150647.1	1e-106	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2040	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-49	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]