PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005712

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 78aa MW: 8593.04 Da PI: 10.6217

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005712	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.5	7.1e-18	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n r tf kR+n ++KKA+ELS+LCd++ +v+i ++ Cla005712 11 IPNRKSRISTFKKRKNSLMKKAYELSTLCDVRTCVLIHGPA 51 77899999*****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.62E-19	1	59	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-17	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.586	1	47	IPR002100	Transcription factor, MADS-box
CDD	cd00120	5.28E-20	2	60	No hit	No description
PRINTS	PR00404	1.2E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-17	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MGRGKLSLNL IPNRKSRIST FKKRKNSLMK KAYELSTLCD VRTCVLIHGP ASSSTEDPST 60 QSELEFTLGL PIAPTSKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022935361.1	1e-25	agamous-like MADS-box protein AGL14
Refseq	XP_022983430.1	1e-25	agamous-like MADS-box protein AGL14
TrEMBL	A0A0A0LME6	1e-18	A0A0A0LME6_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3CDG6	1e-18	A0A1S3CDG6_CUCME; MADS-box protein SOC1-like
STRING	XP_008460878.1	2e-19	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-14	M-type_MADS family protein