PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005809

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 246aa MW: 26661.7 Da PI: 7.5583

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005809	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cla005809 88 FSCNYCRRKFFSSQALGGHQNAH 110 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-6	86	116	No hit	No description
PROSITE profile	PS50157	11.302	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEALNLNLAK DSEPSSSQEA NPDRSNAAAT TSSCPPSSSK VVVADTLPIS LDLTLQFNSN 60 DIDSKGEGEI QGETSSNKSS SSAMPRVFSC NYCRRKFFSS QALGGHQNAH KRERTMAKRV 120 TRMGMFFDRY GSLASLPLHG SALRSLGIEA HGALHQTVLA SDQRPYPGRS VGAKFEQSSF 180 GFPTFIDDYD DDVGMFWPGS FRQVAAKVDS SLGPLKTTVQ NSNPEFGKTM PPPRTETSSP 240 DLTLRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466973.1	1e-166	PREDICTED: zinc finger protein 7-like
Refseq	XP_008466976.1	1e-166	PREDICTED: zinc finger protein 7-like
TrEMBL	A0A1S3CTQ8	1e-164	A0A1S3CTQ8_CUCME; zinc finger protein 7-like
STRING	XP_008466973.1	1e-165	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	5e-37	zinc finger protein 4