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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cla005817 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31177.7 Da PI: 10.1798 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla005817 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 334.7 | 2.4e-102 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87
mddd+ + rn+gyyep+ +k +lglqlmssi+erd k r+ + + + ++++++rd m++ rd++ + ++++l++l++
Cla005817 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSISERDMKHflpgRDPSV-MVNANGSFHPRDcvvseapvhMNY-VRDNWGGN-------PRDRFLNMLPA 89
9***9999*******99..*******************99*9999999.9***********888888888888.78888777.......56789*****9 PP
GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187
+++ + v+++t+ ++slq l++++ ++++ a +ee + +++ k kk+++++ pk++kakk++k k+++++ +r+
Cla005817 90 NHN--------YPVIPETSGAHSLQI-----LQPPSSS---RDEIAASRVEEPPVKKEGGKAKKRQNSEGGPKTPKAKKPRK-----PKDTSMAV--QRV 166
997........889********9999.....4444444...33344445555444444444444455556677777777777.....12344555..689 PP
GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287
k +kk+idlv+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+s krrgaRiagrKmSqgafkk+LekLaa+Gy+++np+DL++
Cla005817 167 KPPKKNIDLVINGIDMDISSIPIPVCSCTGAPHQCYRWGCGGWQSACCTTNISTYPLPMSDKRRGARIAGRKMSQGAFKKVLEKLAADGYNFANPIDLRT 266
**************************************************************************************************** PP
GAGA_bind 288 hWAkHGtnkfvtir 301
hWA+HGtnkfvtir
Cla005817 267 HWARHGTNKFVTIR 280
*************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSI SERDMKHFLP GRDPSVMVNA NGSFHPRDCV 60
VSEAPVHMNY VRDNWGGNPR DRFLNMLPAN HNYPVIPETS GAHSLQILQP PSSSRDEIAA 120
SRVEEPPVKK EGGKAKKRQN SEGGPKTPKA KKPRKPKDTS MAVQRVKPPK KNIDLVINGI 180
DMDISSIPIP VCSCTGAPHQ CYRWGCGGWQ SACCTTNIST YPLPMSDKRR GARIAGRKMS 240
QGAFKKVLEK LAADGYNFAN PIDLRTHWAR HGTNKFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
