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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cla005818 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 31097.7 Da PI: 10.5765 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla005818 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 315.7 | 1.5e-96 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87
md d+ + rn+gyyep+ lk +lglqlms+i e+d k r++ a+ + +aa+++r+ ++ rd ++++ +++kl+++l+
Cla005818 1 MDGDALNMRNWGYYEPS--LKAHLGLQLMSTIGEQDVKHflpgRDAS-AIVNMNAAFHSREsvvsdasvpTSW-GRDGWINH-------HRDKLFNMLTP 89
99999988*******99..*******************999966555.599**********777777665555.67777776.......77899999997 PP
GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187
++s ++ l +t+ + lq+ l+++ + + e +l+iee ++++k +k++kkrq++ pk++k kk++k k++ +s+ +r+
Cla005818 90 TTS--------YSLLAETSGPQPLQM-----LQPHNTS--RDE--MVLKIEE-PPVKKGTKQPKKRQNGGAPKTPKPKKPRK------PKNNDPSV-QRV 164
776........889999999999999.....5555444..223..3355544.7888999999*****************99......23344554.699 PP
GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287
ka+kk+++lv+ng ++D+s++P+PvCsCtG+++qCY+WG GGWqSaCCtt++S +PLP+s krrgaRiagrKmSqgafkk+LekLaa+Gy++snp+DL++
Cla005818 165 KAPKKKMELVINGFDMDISSIPIPVCSCTGTPHQCYRWGYGGWQSACCTTSLSLHPLPMSEKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFSNPIDLRS 264
**************************************************************************************************** PP
GAGA_bind 288 hWAkHGtnkfvtir 301
hWA+HGtnkfvtir
Cla005818 265 HWARHGTNKFVTIR 278
*************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDGDALNMRN WGYYEPSLKA HLGLQLMSTI GEQDVKHFLP GRDASAIVNM NAAFHSRESV 60
VSDASVPTSW GRDGWINHHR DKLFNMLTPT TSYSLLAETS GPQPLQMLQP HNTSRDEMVL 120
KIEEPPVKKG TKQPKKRQNG GAPKTPKPKK PRKPKNNDPS VQRVKAPKKK MELVINGFDM 180
DISSIPIPVC SCTGTPHQCY RWGYGGWQSA CCTTSLSLHP LPMSEKRRGA RIAGRKMSQG 240
AFKKVLEKLA AQGYNFSNPI DLRSHWARHG TNKFVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
