PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005872
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 534aa    MW: 57647 Da    PI: 5.5289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005872genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09351399355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Cla005872 351 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 399
                58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.97E-11346403No hitNo description
SuperFamilySSF474598.37E-17346417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16349416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6351399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MNGKDEFEVE NRTSDPMSIS SGWQFAAAAN LTNESVGFVS TGNPSVVSNG DLGVSSCPST  60
SMSNLFTSTL LNHHTESQNS GFCTTFNEQN SIVASNTTVV DGEGLNSLRS NGDTRTLGMD  120
WNQQNPWMKG IFSGNVPGIF PANLSQLPAD SAFIERAARF SCFNSGVFGA PPTGPFGISD  180
SIGIHSGSGF GRQEVISRNG ASKDVSLPME LEAKEKSPSK NEKDSEMSQD RTKQGCVGES  240
GNDSDEAGFS GGQDERGTLG GAITEPSTEG LCFKKRKRGE QNVGLGQVKE APQQINETAK  300
NGAFNQQKGD QNPSSTTNKP AGKQGKQDSQ PSDAPKEEYI HVRARRGQAT NSHSLAERVR  360
REKISERMRL LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRLDFNI  420
EELLAKEIIQ SKAGPSLFGF PPDLPVPYLP QHRSHHGLIP PCLPNMGSSP DLLRRTINSQ  480
LTSLVGGFKE PVQLPNRWEN ELHNVVPMNF DVTAPSSGQD VDGSTPQCNT RAEL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149484.20.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A0A0KLP90.0A0A0A0KLP9_CUCSA; Uncharacterized protein
STRINGXP_004166054.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-88bHLH family protein