PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005880
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 162aa    MW: 18797.2 Da    PI: 6.0267
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005880genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1475.7e-1554112563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                ++ rr+++NRe+ArrsR RK++ ++eL   v  L  eN++L ++l++l++  ++l +e+
  Cla005880  54 RKRRRMISNRESARRSRMRKQKHLDELWSLVVRLRMENHSLMEKLSKLTDSQQQLLQEN 112
                5789***************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-1450114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.15152115IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1354112IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1254106No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-1254110No hitNo description
CDDcd147022.24E-1755102No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEISGTHFAA PENYGMIQNL NINELLSYIP GNSTSTSDDG DDLNHKLGVV IDERKRRRMI  60
SNRESARRSR MRKQKHLDEL WSLVVRLRME NHSLMEKLSK LTDSQQQLLQ ENVKLKEEAS  120
DFRRMITDIQ MGSPYITHLR ELEEAPCNTF DLMAESSSQS NE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
25374RKRRRMISNRESARRSRMRKQK
36673RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-170LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-170LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016898848.13e-95PREDICTED: basic leucine zipper 43
RefseqXP_016898849.13e-95PREDICTED: basic leucine zipper 43
SwissprotQ9FMC26e-31BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S4DS866e-94A0A1S4DS86_CUCME; basic leucine zipper 43
STRINGXP_008466040.11e-94(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2453033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.17e-37basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]