PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005992
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 241aa    MW: 26757.7 Da    PI: 6.6619
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005992genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp +er +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lke
  Cla005992   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKE 106
                7*************************89********************************************************************9998 PP

     DUF260 100 e 100
                +
  Cla005992 107 Q 107
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1396108IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLARLPISE  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVSLQAQ LASLKEQAAE SIMNASGNGG  120
GVNEKINNRK VPSHPQDLHS WFQSEQPNVT LEFNPNPTPN NNSASNPYYD ENYCIMVNSQ  180
SNGNYEHHMT KMEESGSYGS YEETSGYSMY TLDQLHSNVQ QWSFNKSADD LQSVAFGNRH  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3531227122LOB family transfactor Ramosa2.1
5ly0_B1e-3531227122LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818271e-155LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132581e-155LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022963632.11e-162LOB domain-containing protein 29-like
RefseqXP_022967412.11e-162LOB domain-containing protein 29-like
TrEMBLA0A1S3BHF91e-159A0A1S3BHF9_CUCME; LOB domain-containing protein 29
STRINGXP_008447445.11e-160(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-56lateral organ boundaries-domain 29