PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla005997

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 200aa MW: 22324.3 Da PI: 6.4291

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla005997	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Cla005997 43 YECVFCKRGFTTAQALGGHMNIH 65 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.23E-6	40	70	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.1E-4	41	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.658	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDPNHIPTIV TVAVATTDED KSSKTTIEET DQISNEMGSG RSYECVFCKR GFTTAQALGG 60 HMNIHRKDRV KTKPNTPSKP EPFNNHHSTL RPTTTTATTT ISHHQSFQTY FPTSSTWCLG 120 TTTTPPHDHQ FSYVHNNNPQ VLNTFKDQNW TTTNMSLASQ SLPTLASTNR RDKGSDGNGG 180 DYNDDNDDEL DLELRLGHDR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681826	1e-178	LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBank	LN713258	1e-178	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016901597.1	1e-96	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S4E031	3e-95	A0A1S4E031_CUCME; transcriptional regulator SUPERMAN-like
STRING	XP_008454512.1	3e-96	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-13	C2H2 family protein