PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005998
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 184aa    MW: 21220.3 Da    PI: 7.979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005998genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00024163123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C++ F++   L  H+++H
  Cla005998 41 YGCNFCKREFKSAQALGGHMNVH 63
               67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-63868No hitNo description
Gene3DG3DSA:3.30.160.606.5E-43966IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8244168IPR007087Zinc finger, C2H2
PfamPF139124.6E-64164IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDNGAYMSNN GKQQEQQQQW GYVKEETFSS NNQFQWPAKN YGCNFCKREF KSAQALGGHM  60
NVHRRDRARM RLLPSWVADN NNNNYYSYPN PNFSNFSPSC FTFRSSNKNS LSSSSQDQEK  120
KAIGSCSWNN NYKPSLAPHD QEHVDDEVLH VLKKKKKNLV NLDLKMGNLG DDSSNEDLDL  180
ELHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-113663229superman protein
2l1o_A9e-113663229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818261e-155LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132581e-155LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454679.18e-89PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_011652797.11e-88PREDICTED: uncharacterized protein LOC101216448
TrEMBLA0A0A0L7I09e-88A0A0A0L7I0_CUCSA; Uncharacterized protein
STRINGXP_008454679.13e-88(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-20zinc finger protein 11