PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006112
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 176aa    MW: 20068.6 Da    PI: 7.2848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006112genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-18751250
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a+
  Cla006112  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAA 51
               69******9.**********8.....334********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.69E-27655No hitNo description
Gene3DG3DSA:3.30.730.102.6E-28758IPR001471AP2/ERF domain
PfamPF008475.6E-11752IPR001471AP2/ERF domain
PROSITE profilePS5103219.019765IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17756IPR016177DNA-binding domain
SMARTSM003809.0E-29767IPR001471AP2/ERF domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ATIMCCPNNL  60
PTNHSAPPHL SSAPPSSKLL TPTLIDKLQR CRMASLQMTK TQFALRKSAD PTHRPATKLH  120
DGHWSETEVK WVAGGEAEEV RRLEDDHVEQ MIQELLDLGS FEFCPNDNHN FGSTNN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-132LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-132LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454208.11e-104PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-54ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S3BY291e-102A0A1S3BY29_CUCME; ethylene-responsive transcription factor ERF003-like
STRINGXP_008454208.11e-103(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2139134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-37ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]