PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006186
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 125aa    MW: 14628.9 Da    PI: 10.5486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006186genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   + + G g+W++++ + g+ R  k+c++rw +yl
        Cla006186 14 KGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWINYL 61
                     678*****************************99************97 PP
2Myb_DNA-binding55.51.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e+++ ++++lG++ W++Ia+++  gRt++++k++w+++l
        Cla006186  67 RGMFSQQEEEKILTLHHLLGNK-WSKIAQHLV-GRTDNEIKNYWNSHL 112
                      789*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-20864IPR009057Homeodomain-like
PROSITE profilePS5129415.715961IPR017930Myb domain
SuperFamilySSF466897.11E-2811108IPR009057Homeodomain-like
SMARTSM007178.2E-111363IPR001005SANT/Myb domain
PfamPF002497.0E-131461IPR001005SANT/Myb domain
CDDcd001677.22E-81761No hitNo description
PROSITE profilePS5129425.41362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2765116IPR009057Homeodomain-like
SMARTSM007176.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1667112IPR001005SANT/Myb domain
CDDcd001671.69E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MESTETEKEK RKKKGLWSPE EDEKLRSFIL KNGHGCWTSV PIKAGLLRNS KSCRLRWINY  60
LRPGLKRGMF SQQEEEKILT LHHLLGNKWS KIAQHLVGRT DNEIKNYWNS HLKKKVVSGL  120
EDSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-49LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-49LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439218.12e-67PREDICTED: transcription factor LAF1-like isoform X2
RefseqXP_011652772.12e-67PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like
SwissprotQ9M0K41e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1S3AXV76e-66A0A1S3AXV7_CUCME; transcription factor LAF1-like isoform X2
STRINGXP_004168534.12e-68(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.15e-57myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]