PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006194
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 782aa    MW: 87855.1 Da    PI: 8.162
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006194genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1131.9e-355146042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++de+++++isw+++g++f+v+++  fa+++LpkyFkh+nf+SF+RQLn+YgF+kv +++         weF+++ F+kgkk+ll++i+
     Cla006194 514 FLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDR---------WEFANECFRKGKKQLLCEIQ 601
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Cla006194 602 RRK 604
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102681.3E-12226406IPR019395Transmembrane protein 161A/B
Gene3DG3DSA:1.10.10.107.7E-37505598IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-56510603IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.45E-32511603IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-18514537IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-31514603IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18552564IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340553577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-18565577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MYLQILSTYR NLLLHVGLSL SLSVFIIFFK IPTLFLHGIF TYIHPDNTNS GVRAAIRRPD  60
GSNSGSGLEG YRNLSSTGAA EIRKRTKSKD KVEFDESKAQ IFRLKLDENH LQTRIYFKEY  120
RDGFTFSFVG ISCLLLQIFL GASKNSGVWG NGIFVPLLFA IFAGCKLFVS LTKVALEKSA  180
SRTLDRQLSL LFGVSGFLFG LLTCSAFSPL ILDFDLGEIG GSGACFVSIL MACCAGFLFI  240
PATKIARSFW LGTDQIRCNL DMVYCGWFSR MVLYSSQVVM AFTTLLWVNP LAEIFINKNI  300
GEGTIDRMSS EIRNADRLVG SIGFSKADFI KLRLWCLSLS GFLQIIAVRQ NLQMYLNEAL  360
LSWYQRLHAG KVPDLDFSRA KVFLHNHYLC VSALQFFAPP ALVFLFVGLS QIGINSLENT  420
NLHLPFPSLG SKKILSSSFF HEPSRIEIPV PYLENSPNYS SKILIPKLSL GFGSCDRSFG  480
DLISLILGVP LMEDPTAKQK PTAGDSQRSV PTPFLTKTYQ LVDDETIDHV ISWNDDGSTF  540
IVWNTMAFAR DLLPKYFKHN NFTSFLRQLN TYGFRKVVSD RWEFANECFR KGKKQLLCEI  600
QRRKLAAPVP STATIPSAQL LTLTGNSSGE EQVISSDETP TTALAELIDE NDRLRKEKVQ  660
LTEQLVEVKS LCNNIFSLMS SFVESQFKSS FKVRESVLTS AKSLDLFPVK RASGEDETAE  720
AEEEETNQIG AKRPREYREV ATETAEDDTA LRLQPPDRSE VLSERINCQK KVDQKTWHNQ  780
VH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2350960325129Heat shock factor protein 1
5d5v_B7e-2350960325129Heat shock factor protein 1
5d5v_D7e-2350960325129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140782.10.0PREDICTED: transmembrane protein 161B
TrEMBLA0A0A0L8M80.0A0A0A0L8M8_CUCSA; Uncharacterized protein
STRINGXP_004170342.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-65heat shock transcription factor B2A