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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla006230 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 156aa MW: 17680.4 Da PI: 6.6547 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 20.2 | 1.1e-06 | 3 | 38 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
s + +Lr+llP + +++ + a+i+ +Av+YI +L+
Cla006230 3 SLLINLRSLLPLEF--IKGRRTRADIVDEAVNYIEHLR 38
56678*******65..********************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 9.674 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.19E-6 | 3 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.0E-4 | 4 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 156 aa Download sequence Send to blast |
MASLLINLRS LLPLEFIKGR RTRADIVDEA VNYIEHLRGK ISELHVKRDA TIKRLNLESS 60 SCNNQRCNLA SPCCVVIKPY SGGLEIAISN CITEENFQLS GVMRVLLEHN IQIESCASTK 120 VNDQRMLHTV QTKVDDSIKI DLHELEQKLY EVCNSE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008439139.1 | 2e-76 | PREDICTED: transcription factor bHLH36-like | ||||
| Refseq | XP_008439141.1 | 2e-76 | PREDICTED: transcription factor bHLH36-like | ||||
| Refseq | XP_008439142.1 | 2e-76 | PREDICTED: transcription factor bHLH36-like | ||||
| Refseq | XP_016898946.1 | 2e-76 | PREDICTED: transcription factor bHLH36-like | ||||
| TrEMBL | A0A1S3AY11 | 4e-75 | A0A1S3AY11_CUCME; transcription factor bHLH36-like | ||||
| STRING | XP_008439139.1 | 7e-76 | (Cucumis melo) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF792 | 33 | 125 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 2e-19 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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