PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006231
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 259aa    MW: 29916.2 Da    PI: 9.9304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006231genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-0990138454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h erEr+RR+++   +  Lr+llP  +   ++K   ++    A +YIk+ 
  Cla006231  90 MHRERERQRRQQMGALYMSLRTLLPLEF--IKGKRAISDQMNGALNYIKHQ 138
                7*************************65..9******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.07E-1184163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.95486138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-688157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-690137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYPLQKSEEK CFQISFNPHQ HIIPEDLIFG HHVSAVEANH HHHNNNNTNN NNNEVKNLRI  60
RRRRKPLKTL DHHFDGSGGV SDQDHQIKLM HRERERQRRQ QMGALYMSLR TLLPLEFIKG  120
KRAISDQMNG ALNYIKHQEK KIKEIEAKRD ELKKMYNSSN FEISKLEQTP NCRFKISSFD  180
GGVVEILITT NGFHGFPLSR ILKVVVEQGL EVIRCGSTIV NHKSIHTIQI EVSDPTSLDL  240
AQLGNKLKEA VPLLRQVTD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-138LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-138LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148118.11e-134PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0A0LB701e-133A0A0A0LB70_CUCSA; Uncharacterized protein
STRINGXP_004148118.11e-133(Cucumis sativus)
STRINGXP_004173713.11e-133(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-23bHLH family protein