PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006306
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YA
Protein Properties Length: 269aa    MW: 29487.4 Da    PI: 7.1259
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006306genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.56.9e-31172228158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ++p++VNaKQyq+Il+RRq+Rak+e+ekkl +k+rkpylheSRh+hA+rR R+sgGrF
  Cla006306 172 QDPVFVNAKQYQGILRRRQARAKAEAEKKL-IKARKPYLHESRHQHAIRRSRSSGGRF 228
                58****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-34170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.731171231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-22174196IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-26174228IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-22205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQSKSETNNQ LDPNGAPSTS IYYEPWWRGM GYNTFPLPVV GGNASSSTSP EFPNGGSESN  60
DGQSVSNNDV NDEEDDVSKE AQATGSPHSV GSYRQDAQKM QHVSSTLPAM HGECGMQSTH  120
LELVGHSIAC ASNPYQDPYY GGMMAFYGHQ PLGYPMVGGP HARMPLPIEI AQDPVFVNAK  180
QYQGILRRRQ ARAKAEAEKK LIKARKPYLH ESRHQHAIRR SRSSGGRFAK KNEADGKEMH  240
SDKVNESGYR LNDGSEQQNG SSLTNKASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18172239269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818071e-121LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132561e-121LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450423.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
RefseqXP_008450424.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLA0A1S3BPV30.0A0A1S3BPV3_CUCME; nuclear transcription factor Y subunit A-1-like isoform X2
STRINGXP_004154628.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.36e-50nuclear factor Y, subunit A1