PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006505
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 249aa    MW: 28415 Da    PI: 7.898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006505genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004891113223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+++++++ +L  H +  H
  Cla006505  91 SCSVCPRVYPTSRLLSLHVSEaH 113
                6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.376388IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806588IPR007087Zinc finger, C2H2
SMARTSM003555.390113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092113IPR007087Zinc finger, C2H2
SMARTSM003550.025128153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MELESQSEFP YWKPFQRRFD PDSPFFASGN VEREILAKQV ALDLTEDEKV QLHNMAVDAS  60
SEIFCPIVGC GAHLKSLDDF EDHYNSRHTA SCSVCPRVYP TSRLLSLHVS EAHDSFFQAK  120
VARGYDMYEC LVEGCGLKFK SYKSRQQHLV DKHKFSASFE FFKKAHPSKK QRQKLHRKQA  180
LQGWEETSEM EVENETIDGL ISGVSKLTTS DLTPSSISFG RRHTRGLQFL PRAVQREKVS  240
DSSTAGTKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818151e-156LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132571e-156LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441334.11e-175PREDICTED: zinc finger protein 511
RefseqXP_008441335.11e-175PREDICTED: zinc finger protein 511
TrEMBLA0A1S3B3Y41e-174A0A1S3B3Y4_CUCME; zinc finger protein 511
STRINGXP_008441334.11e-174(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106zinc ion binding;nucleic acid binding;zinc ion binding