PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006605
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 425aa    MW: 47116.1 Da    PI: 4.6415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006605genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1980131156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a++ ++g+
  Cla006605  80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAIEAALAYDEAARTMYGH 131
                56*****999.**********8...3.35************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1380131IPR001471AP2/ERF domain
CDDcd000182.16E-3080139No hitNo description
SMARTSM003801.3E-3681144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3181139IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2081138IPR016177DNA-binding domain
PROSITE profilePS5103221.50981138IPR001471AP2/ERF domain
PRINTSPR003671.7E-98293IPR001471AP2/ERF domain
PRINTSPR003671.7E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALSDQYSDA ISLPKNSIRK RKSRSRRDRS TVAETLAKWK AYNECFDSCN DGSKPIRKAP  60
AKGSKKGCMK GKGGPLNSHC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FPTAIEAALA  120
YDEAARTMYG HSARLNLPNI KNRGQLQGIL LEDYLGLRNS DSSTATSTCS ESTTTTSNQS  180
EVCVPEEFAK RSQLVPSNIK IEDGEGESRT GDHSDGTATP MPLENEVKHE DCNDRAAVLG  240
TEFPSLDQSQ NFPMDEIFEP RTGNQADHMA MPMILEKQVK DEDLDAVYRD WSNDQAVLPE  300
AGISSLNNLQ NFQMDEMFDV EELLNLISSD SLYDPTTNIL KGNADGYTNV APSQVSNLGS  360
EKPSSWSYQF QNPGAKLLGS LQQTEQAPAD VDYGFDFLKQ GREEDLNAAA DDCVRYLNEM  420
GDLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1781138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1781145570ATERF1
3gcc_A3e-1781145570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656418.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X1
TrEMBLA0A0A0KBP30.0A0A0A0KBP3_CUCSA; Dehydration-responsive element-binding protein 2C
STRINGXP_004138558.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-38ERF family protein