PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla006623

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 136aa MW: 14757.6 Da PI: 6.5023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla006623	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56.3	9.3e-18	1	57	45	101
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++++pe++r da++slvyeA+ r+rdPvyG++gvi++lq+ql++l+++l+++++++ Cla006623 1 MYDEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQI 57 57899**********************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.262	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-15	3	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MYDEVPESQR ADAANSLVYE ANLRLRDPVY GCMGVISALQ HQLHTLQSDL NSIRTQIFNF 60 KFTQHNNSHI PNFISAAATP PAAPPTPPHS QPPPLSLPPP LPSSSSIFSS PIITTTTAAP 120 ELINPISTTQ HISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	1	60	55	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	1	60	55	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	6e-67	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	6e-67	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456762.1	2e-37	PREDICTED: LOB domain-containing protein 15-like
TrEMBL	A0A1S3C3L1	4e-36	A0A1S3C3L1_CUCME; LOB domain-containing protein 15-like
STRING	XP_008456762.1	6e-37	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-26	LOB domain-containing protein 13