PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006665
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 684aa    MW: 74669.3 Da    PI: 6.1251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006665genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.11.9e-1043216833374
       GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++L++++e +++g+  laq +Larl+++ +sp g+p+qR+a+yf eAL+  l++  s+ +   +ps+ s    + ++aa+k fsevsP+l+f+++t Nqa
  Cla006665 321 DQLFKAVELIETGNSVLAQGILARLNHQlSSPIGKPFQRAAFYFREALQLLLQN-PSNPSTNPNPSPFS---IIFKIAAYKSFSEVSPVLQFANFTSNQA 416
                79************************998************************9.22333334666666...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrv 196
                +lea++g++rvHiiDfdi++G+QW++L+q+La R+    +gpp lRiT+++s ++++  el  t+e+L++fA+ l++ fe +v+ ++ l++   +  L+v
  Cla006665 417 LLEAFNGCDRVHIIDFDIGYGGQWASLMQELALRSnttgGGPPFLRITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEVVNVECLNSGsWPLPLNV 516
                ***********************************999889*************99***************************85555544423556899 PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                +++Ea+aVnl +   ++++ s+sl+     +L+++k+l+Pk+vv v++ +++ +++F +r+++al+ ysal++s+ea    + +++ k+Er l+++ i++
  Cla006665 517 SEDEAIAVNLPV--GSFFNYSLSLPM----ILRFIKHLNPKIVVSVDRGCSRMDAPFPHRVINALHSYSALLESMEAV-TMNMDTQLKIERYLVQPCIEK 609
                99*********9..566666899988....*********************************************887.57889**************** PP

       GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                vv++ + +    +e++  W++ + ++GF p+++s+++++qa++ll++++++g+++++++ slvl+W++++Lvs+SaWr
  Cla006665 610 VVTNPQCS----NERVPPWKSVFLSSGFCPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWR 683
                ****9998....9999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.706293663IPR005202Transcription factor GRAS
PfamPF035146.6E-102321683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MWVLPNPPLF SILEEAQALP LPLPHCLPLS AAGGGGGGVA PTRATPPSSL PENPSPLDKC  60
GGGGGLGIDD WESVLPESPG QGPSILGLIM SDVEDPSLGL NKLLQSGGGG GGGGGSHLDL  120
EFSVDHGLVF EANTLAGESI VDPSLQGPSC SDFHNARLAA AVSNSNAMFS GVFQNQNQMV  180
EGVDEKPQIF NSSQVVMNQN QTQFTQNPAL FMPLPYASPV QDHHQNHHHH HLLGGAPPAK  240
RFNSGSIGPN YPVKSPFLDS GQENFNRRQQ QQPQQVQLFP HHSHHHNLPQ QQQRPSMAAL  300
AKQKMVNEDI ANQQLQQGIS DQLFKAVELI ETGNSVLAQG ILARLNHQLS SPIGKPFQRA  360
AFYFREALQL LLQNPSNPST NPNPSPFSII FKIAAYKSFS EVSPVLQFAN FTSNQALLEA  420
FNGCDRVHII DFDIGYGGQW ASLMQELALR SNTTGGGPPF LRITAFASTS THDDFELGFT  480
QENLKNFAND LNIGFELEVV NVECLNSGSW PLPLNVSEDE AIAVNLPVGS FFNYSLSLPM  540
ILRFIKHLNP KIVVSVDRGC SRMDAPFPHR VINALHSYSA LLESMEAVTM NMDTQLKIER  600
YLVQPCIEKV VTNPQCSNER VPPWKSVFLS SGFCPLTFSN FTESQAECLL QRTPVQGFHI  660
DKRHSSLVLC WHRKELVSIS AWRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3634868247378Protein SCARECROW
5b3h_A4e-3634868246377Protein SCARECROW
5b3h_D4e-3634868246377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105115SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140608.20.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-146SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0A0KAR40.0A0A0A0KAR4_CUCSA; Uncharacterized protein
STRINGXP_004163758.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]