PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006719
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 192aa    MW: 21566.8 Da    PI: 7.1367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006719genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-193687156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++++GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Cla006719 36 PKFRGVRLRT-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 87
               79*****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-303694No hitNo description
PfamPF008471.4E-133687IPR001471AP2/ERF domain
PROSITE profilePS5103222.9193794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-313795IPR001471AP2/ERF domain
SMARTSM003808.5E-3637100IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213795IPR016177DNA-binding domain
PRINTSPR003678.4E-103849IPR001471AP2/ERF domain
PRINTSPR003678.4E-106076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MTTNSYHSTT SSSAVTSRKR QRSTTTTESE SEESTPKFRG VRLRTWGKWV SEIREPRKKS  60
RIWLGTYPTA EMAARAHDVA ALAIKGHRAF LNFPQLKHHL PRPASLSAKD IQAAAAQAAA  120
IKQEPETTSC EDEDTWFDLP DLITNGFLLG FDHYSSSPSS SSSSSPWQFL ADDHDDHHLQ  180
WHSDFSHIIF PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1637941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022959279.16e-85ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ78e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S3CBH62e-82A0A1S3CBH6_CUCME; ethylene-responsive transcription factor ERF039-like
STRINGXP_008460188.13e-83(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2454933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]