PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006734
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 284aa    MW: 32504.4 Da    PI: 9.6462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006734genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-3122128199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SS.SEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgr.sefel 92 
                f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+    +++ ++ +l
  Cla006734  22 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHralPSHSaNDNRL 121
                89**************************99555567889************************************************6653355577778 PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                ++ ++r+
  Cla006734 122 FIDWRRR 128
                8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4217129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3019110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-2520109No hitNo description
SMARTSM010191.2E-2222129IPR003340B3 DNA binding domain
PROSITE profilePS5086314.43822129IPR003340B3 DNA binding domain
PfamPF023621.5E-2822128IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDLSLRMESN GFDGVVEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNDKGLI  60
LNFEDRHGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFHRA LPSHSANDNR  120
LFIDWRRRRP DAPTPHHNHH HHFSNPFLFR WATARHLPPP LPPMRRTTQH HHLYPNYGFE  180
VPNFGMSNNN NSSMYYFRPM SPSSSSSSLY RMGNGDEIVV NNQECSSMGI INKPGSGAAK  240
RLRLFGVNME CASPDGEGGG GEDLSNSGDS RRGKEPLSLN WDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-62151281113B3 domain-containing transcription factor NGA1
5os9_B1e-62151281113B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129WRRRRP
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140634.21e-164PREDICTED: B3 domain-containing transcription factor NGA2-like
SwissprotO827992e-68NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ9M2681e-68NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A0A0KCC31e-163A0A0A0KCC3_CUCSA; Uncharacterized protein
STRINGXP_004140634.11e-164(Cucumis sativus)
STRINGXP_004164996.11e-164(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-68B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]