PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006862
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24079 Da    PI: 4.9495
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006862genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.5e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss
  Cla006862  9 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 59
               68***********************************************96 PP
2K-box47.67.2e-17981682393
      K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                  ++ei  L+    ++ G++L+sLs+ +Lq+Le+qL +++ +i++kK+ llleq+++ + + +e q++n+a
  Cla006862  98 SSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNA 168
                44567777777778899***********************************************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31271IPR002100Transcription factor, MADS-box
CDDcd002651.64E-40270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.37689180IPR002487Transcription factor, K-box
PfamPF014864.4E-1199167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGRVEIKK IENINSRQVT FSKRRNGLMK KAKELSVLCD AEVAIVVFSS TGRLYEFSST  60
SMEHTLSRYR GQGMELDFPK ETLDHPTQLP PSDSDAKSSE EEIARLKLAY MQMRGQELDS  120
LSFIDLQNLE NQLREGIVSI KDKKETLLLE QLQRCRSQLE EFQQRNNATL LESSPLQRSY  180
LSDSKTASTN ETEAETEAEE NDRSEISLHL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21169169MEF2C
5f28_B3e-21169169MEF2C
5f28_C3e-21169169MEF2C
5f28_D3e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818782e-77LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132622e-77LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455789.11e-138PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9M2K82e-50AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A1S3C2E61e-137A0A1S3C2E6_CUCME; MADS-box transcription factor 23-like
STRINGXP_008455789.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-52AGAMOUS-like 18