PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007276

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 214aa MW: 23317.4 Da PI: 8.2417

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007276	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+ael+++++e Cla007276 19 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAE 118 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-42	19	116	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGRRTSLQAP PGTLNTITPC AACKLLRRRC AQECPFSPYF SPHEPHKFAS VHKVFGASNV 60 SKMLMEVSEN QRADAANSLV YEANVRLRDP VYGCMGAISA LQHQIQALQA ELNAVRAEIL 120 RHKFREANNM IHSSPQQQHL PFLSSSTEVV SVAVPPPPPP PPLPPPPHHD ASSSTSSLYN 180 RPVVAVAADY STISSDENVP YFVTTSSTAH QLNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	9	130	1	122	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	9	130	1	122	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681900	1e-159	LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBank	LN713264	1e-159	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456927.1	1e-121	PREDICTED: LOB domain-containing protein 15
Swissprot	Q9AT61	2e-74	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1S3C502	1e-120	A0A1S3C502_CUCME; LOB domain-containing protein 15
STRING	XP_008456927.1	1e-121	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-76	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]