PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007345

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HSF

Protein Properties

Length: 265aa MW: 31040.1 Da PI: 8.2751

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007345	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.4	3.6e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed+++++++sw ++ ++f+v+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF +++Fkkg+++ll +i+ Cla007345 25 FLTKTYDLVEDPTTDHIVSWGQSHTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYGFKKIVAER---------WEFGNENFKKGERKLLLEIQ 112 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ Cla007345 113 RRKSH 117 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-37	16	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.77E-31	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-52	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-19	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.8E-31	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEEMIENYNV GFCSVESQKA NPAPFLTKTY DLVEDPTTDH IVSWGQSHTT FIVWRPSEFA 60 THILPNYFKH NNFSSFVRQL NTYGFKKIVA ERWEFGNENF KKGERKLLLE IQRRKSHNHN 120 NNNQQIPFQF FHLQQQHQLS LCYTTTSSSD PDILAALTHD NRRLRRRNFM LLSELAQMKN 180 LYSDIIYFIQ NHVKPLDHKY GSRSVPKLVE LDHPSPPLPT SPEIRLEEES GMVKLFGVPI 240 RGKKRVHPEE SEVQMMSSHG GYDLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-21	20	114	15	120	Heat shock factor protein 1
5d5u_B	7e-21	20	114	24	129	Heat shock factor protein 1
5d5v_B	7e-21	20	114	24	129	Heat shock factor protein 1
5d5v_D	7e-21	20	114	24	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681807	1e-167	LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBank	LN713256	1e-167	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139066.1	1e-150	PREDICTED: heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	2e-71	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0A0M2Y7	1e-149	A0A0A0M2Y7_CUCSA; Uncharacterized protein
STRING	XP_004139066.1	1e-150	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1612	33	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-51	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]