PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007368

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 377aa MW: 38347.9 Da PI: 9.2487

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007368	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.6	1.6e-60	160	326	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100 sg+ +C+dCGnqakkdC+h+RCR CCksrgfdC+thvkstWvpaa+rrerq a+++ a ++ +++ k++r ++++++ s+t++s++ ++ ++ Cla007368 160 SGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGGASEAAAGGTSsgSTSGGKKPRLI-ASQTTTNSHTSTSNTPTP-SF 257 56779*******************************************9988887777766663355555566654.444444445555544433.55 PP DUF702 101 etss...........lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGlee 154 ++ss lPe+++++avf+cvrv++v+ g +e+aYq++v+igGh+fkG+Lyd+G+e+ Cla007368 258 DASSaadmsskkakkLPEQIRAPAVFKCVRVTAVEGgsggGGNEYAYQAVVKIGGHIFKGYLYDHGVEA 326 555556677789999***************9843335689********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-56	164	325	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.5E-25	164	206	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.7E-24	273	324	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGQFLSRYGD QKRKINLGFF FFFAGDLPAV AAARRLPSDS GAFADWVAPP SAIVADELSL 60 GFNSAATVPP ARMWPSSRPL AVGYGHTAAP APDMVGLMAS GFGVGVSVLP LLTGLAPSSV 120 GIEEANLMIS RGSSSGGVQF NGNNLDGFGI LGGGSSSLNS GAGTCHDCGN QAKKDCSHRR 180 CRSCCKSRGF DCSTHVKSTW VPAARRRERQ MLGGASEAAA GGTSSGSTSG GKKPRLIASQ 240 TTTNSHTSTS NTPTPSFDAS SAADMSSKKA KKLPEQIRAP AVFKCVRVTA VEGGSGGGGN 300 EYAYQAVVKI GGHIFKGYLY DHGVEAARDG FPTLSNLHLG DGGSASSPVI DPADVYGSSA 360 ARGGGLAGGS GYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGQFLSRYGD QKRKINLGFF FFFAGDLPAV AAARRLPSDS GAFADWVAPP SAIVADELSL  60
GFNSAATVPP ARMWPSSRPL AVGYGHTAAP APDMVGLMAS GFGVGVSVLP LLTGLAPSSV  120
GIEEANLMIS RGSSSGGVQF NGNNLDGFGI LGGGSSSLNS GAGTCHDCGN QAKKDCSHRR  180
CRSCCKSRGF DCSTHVKSTW VPAARRRERQ MLGGASEAAA GGTSSGSTSG GKKPRLIASQ  240
TTTNSHTSTS NTPTPSFDAS SAADMSSKKA KKLPEQIRAP AVFKCVRVTA VEGGSGGGGN  300
EYAYQAVVKI GGHIFKGYLY DHGVEAARDG FPTLSNLHLG DGGSASSPVI DPADVYGSSA  360
ARGGGLAGGS GYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011660164.1	1e-164	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-67	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0A0M099	1e-163	A0A0A0M099_CUCSA; Transcription factor
STRING	XP_004154692.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24559	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	5e-47	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]