PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007467
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 194aa    MW: 21486.5 Da    PI: 4.4491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007467genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-182069255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Cla007467 20 KYKGVRKRK-WGKWVSEIRLPNS---RDRIWLGSYDKPEKAARAFDAAQFCLRG 69
               8*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.38E-282079No hitNo description
SMARTSM003802.3E-312083IPR001471AP2/ERF domain
PROSITE profilePS5103221.6142077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-292079IPR001471AP2/ERF domain
PfamPF008471.1E-112069IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-202079IPR016177DNA-binding domain
PRINTSPR003671.4E-82132IPR001471AP2/ERF domain
PRINTSPR003671.4E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MADRHNSGRE TEYKSGQNLK YKGVRKRKWG KWVSEIRLPN SRDRIWLGSY DKPEKAARAF  60
DAAQFCLRGP HAKLNFPDSP PVIDGGDRLS AQEIQAAAAK YAEEQGRDGV GEDGYSNEND  120
EVVAVEGGDG DGGWPVWDMF DGASEFGFGN IMGGNGMIYD GDITFQVQED MEECGDGGGY  180
FCHEANFLWN FGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1420771472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818612e-95LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132612e-95LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023524386.12e-93ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC21e-44ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S3BVW61e-85A0A1S3BVW6_CUCME; ethylene-responsive transcription factor ERF017-like
STRINGXP_008452799.12e-86(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]