PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007559
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 279aa    MW: 31905.3 Da    PI: 9.7175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007559genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.7e-0896143254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +  h  +Er RR++ ++++  L ++lPk+     +K++K +i++ A + I+++
  Cla007559  96 CHRHMLNERMRREKQKQSYLALHSMLPKN-----TKNDKNSIVQSAARAIQEM 143
                567899**********************9.....8**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-992154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-792148No hitNo description
PROSITE profilePS5088811.22394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-596143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-598162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-4100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDHTFTAEFW HNDFFWLDAP ISVPAAGPAR QISAFVPYDP SQVATGLGQE NNPTTTTVTT  60
SYNSRNVNKR MVEYWRKHWH EKKETSPLGE LEREKCHRHM LNERMRREKQ KQSYLALHSM  120
LPKNTKNDKN SIVQSAARAI QEMKALEEIL KRRNLELEMA IARKKKEKEK ETTPIISVAL  180
SNPSCGINSM LAVLNVLKTV GVNSKAIHAT FVNSQFSAQL AIDTHMGAAE VERALQVTLN  240
EAERKFQRQC MEGSKQIKES HFNFNNNKGA YEVGPEFQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150165KRRNLELEMAIARKKK
2162167RKKKEK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818432e-81LN681843.1 Cucumis melo genomic scaffold, anchoredscaffold00105.
GenBankLN7132592e-81LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465193.11e-128PREDICTED: transcription factor bHLH92
TrEMBLA0A0A0LIK31e-128A0A0A0LIK3_CUCSA; Uncharacterized protein
STRINGXP_008465193.11e-128(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-41bHLH family protein