PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007566
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 164aa    MW: 18639 Da    PI: 9.5345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007566genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00035678123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F +   L  H+++H
  Cla007566 56 YTCGFCKRQFQSAQALGGHMNVH 78
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-65382No hitNo description
PROSITE profilePS5015710.8455683IPR007087Zinc finger, C2H2
PfamPF139128.0E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSSPQEEVRI ITKPKIKPHP KAKASSKHNN TREGNQEEEE EKDIIVGFPW ASSRTYTCGF  60
CKRQFQSAQA LGGHMNVHRR DRAKLRRSPP LDSTTHDHLD FHGSSSQPIK FLKLYDFSSF  120
HGGEADESDG ECKIWKKVNK FVKKKEAALL GSSNDIDLEL RLGF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818431e-157LN681843.1 Cucumis melo genomic scaffold, anchoredscaffold00105.
GenBankLN7132591e-157LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650145.13e-83PREDICTED: zinc finger protein 3-like
TrEMBLA0A0A0LNQ17e-82A0A0A0LNQ1_CUCSA; Uncharacterized protein
STRINGXP_008465205.11e-72(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2456722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-18C2H2 family protein