PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007663
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 513aa    MW: 55834.4 Da    PI: 6.6087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007663genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l
        Cla007663 35 KGPWTSAEDGILIEYVKKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 82
                     79******************************************9986 PP
2Myb_DNA-binding49.87.8e-1688131146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
        Cla007663  88 KGSFSQEEERIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 131
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6043082IPR017930Myb domain
SuperFamilySSF466891.42E-2933129IPR009057Homeodomain-like
SMARTSM007175.1E-133484IPR001005SANT/Myb domain
PfamPF002492.7E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-243689IPR009057Homeodomain-like
CDDcd001673.66E-113782No hitNo description
PROSITE profilePS5129425.98383137IPR017930Myb domain
SMARTSM007175.5E-1687135IPR001005SANT/Myb domain
PfamPF002499.9E-1588131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2590136IPR009057Homeodomain-like
CDDcd001671.70E-1190131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVESKGEKGK SEGDHQHHAG SGGGGDNGGG RALKKGPWTS AEDGILIEYV KKHGEGNWNA  60
VQKHTGLARC GKSCRLRWAN HLRPNLKKGS FSQEEERIII ELHAKLGNKW ARMAAQLPGR  120
TDNEIKNYWN TRMKRRQRAG LPLYPLEIQQ EATAFHLRQH HHHHHHQPQQ QQHNSASAVA  180
TNFSAIRHKP DFNNHHPNSV SIFNFSSNMN NSQKNFNDGS SFYATPTSQF KFFPENNNGG  240
GGFPLPLSPV SPFPQIGQQM NQSFSPPPQA ALQLSYGGYV CNSNSGLNSM ILGAPYHHLI  300
PGLETELPSI QTPPHSTTPA SSGTSGGEGI MAAANSGLLD VVLLEAEARS RNEKQSKEES  360
SSAGEMKQRI NQGSTEDEDA TLYVESVLGS SGGETTAAAA ENHSDEFSSS HSSSRKRPRM  420
EPLEEMDSMD DDDLMSLLNN FQSGMPVPEW YPGSSNDDLG INMHNGPSLC ESNGNPGGDE  480
QRQNVASPSA VASSPVLEWS LGSSCWNNMP SIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-33331365107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455547.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A1S3C0R50.0A0A1S3C0R5_CUCME; transcription factor MYB86
STRINGXP_008455547.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.28e-72myb domain protein 101