PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007686
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 448aa    MW: 51045.5 Da    PI: 7.1687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007686genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06831126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               +kt+lC  +++ G+C++ ++C+FaHg
  Cla007686  8 FKTKLCVLYQK-GHCSR-PSCSFAHG 31
               69*********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-9637IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192733IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MMVGRKLFKT KLCVLYQKGH CSRPSCSFAH GNAELRRFAG GSTGEVLHWF MPPEYAKWTS  60
SWSRQEYRGN DLRHKLDSRH SPLQERDSRG RHGPRVAEYS SSWSLERHSD RKRRKKELGD  120
PRRDYSGNLR ISDRNEEEDR EGKTLFTSRD TLEGQLNKMQ TDIEMAEHHK HQAEVYLDEK  180
IQEVDSLTSR IQELESQLHK ERQECRRIKS KIKKFVKAHN RYSRSQVRLQ QLGDQLGPDV  240
NKIGANEEDS SINIVSDGED PGYHTSGPFH DLQKDTSVSK RKMHAVQDTA ENSNRADLNK  300
GNKEAVVRRI SRWNAHPAKS VYSKIEAVGS EISDLIPAAN ESRQKRGRTS SSVSTADKVR  360
GLESGVVVPL TSMAAHAVDE EVDIDLEINN EVKEPRESTK EAASGGLPFF PPPPPPPIRE  420
FNHSRYEGED QNVDVEVVDD EREGMDDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RKRRKKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817922e-72LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132552e-72LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455411.10.0PREDICTED: zinc finger CCCH domain-containing protein 40 isoform X1
TrEMBLA0A1S3C0E80.0A0A1S3C0E8_CUCME; zinc finger CCCH domain-containing protein 40 isoform X1
STRINGXP_008455411.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF974955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-53C3H family protein