PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007696

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GeBP

Protein Properties

Length: 407aa MW: 46340.8 Da PI: 5.047

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007696	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	122.6	1.9e-38	182	276	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlwse+Dei++LqG+idf+ +g++p+ d++ f +f+k+++s++vsk+ql++K+rrLKkK+k++++k ++g++p+f k+h++k+f lskkiWg Cla007696 182 INRLWSEDDEISILQGMIDFQLAKGSDPYTDMSLFLDFIKENLSVDVSKNQLIDKVRRLKKKYKNNSEKGRNGDDPVFLKQHEHKSFVLSKKIWG 276 68********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-33	183	276	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MAPKRLVEDL PSFHAFSDAE EESDYETHED PEIDNLMQNS EDENEEQTQE DDEEEEQEEQ 60 EQEQEHEQAI RSPIISKREN SLEKDSGFVS DSDSEKTQSS PSASAFTIKP IIRKLACGSS 120 KPKKDSHKSS IDCATVKPVS SGSKRPIENN FQGNESNKKK IKRGVMNGED IEEGKKVSGS 180 GINRLWSEDD EISILQGMID FQLAKGSDPY TDMSLFLDFI KENLSVDVSK NQLIDKVRRL 240 KKKYKNNSEK GRNGDDPVFL KQHEHKSFVL SKKIWGNEAK KKPRKQSVKA SNSVSISSPR 300 VDVEAGKKEI VNNNNVESKI LPEEFLSEYP WLKASFMVEN DKFCSEGLMR LVRERMPLIG 360 SEKAKELDDK WRKLGESELE LYVKKVDLVR EQCKLILDSM GKAKRAT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MAPKRLVEDL PSFHAFSDAE EESDYETHED PEIDNLMQNS EDENEEQTQE DDEEEEQEEQ  60
EQEQEHEQAI RSPIISKREN SLEKDSGFVS DSDSEKTQSS PSASAFTIKP IIRKLACGSS  120
KPKKDSHKSS IDCATVKPVS SGSKRPIENN FQGNESNKKK IKRGVMNGED IEEGKKVSGS  180
GINRLWSEDD EISILQGMID FQLAKGSDPY TDMSLFLDFI KENLSVDVSK NQLIDKVRRL  240
KKKYKNNSEK GRNGDDPVFL KQHEHKSFVL SKKIWGNEAK KKPRKQSVKA SNSVSISSPR  300
VDVEAGKKEI VNNNNVESKI LPEEFLSEYP WLKASFMVEN DKFCSEGLMR LVRERMPLIG  360
SEKAKELDDK WRKLGESELE LYVKKVDLVR EQCKLILDSM GKAKRAT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022969118.1	0.0	STOREKEEPER protein-like
TrEMBL	A0A1S3C0T6	0.0	A0A1S3C0T6_CUCME; mediator-associated protein 1-like
STRING	XP_008455395.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13966	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-29	DNA-binding storekeeper protein-related transcriptional regulator