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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla007701 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 437aa MW: 48980.7 Da PI: 6.1826 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 285.3 | 1.8e-87 | 45 | 428 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPilkfshl 96
++lL++cA a++s+d +laq++++ l++ asp gdp+qRl++ f++AL r +r ++ + + + + +n +s+ ++++ l +++v P+++f++
Cla007701 45 EKLLVHCASALESHDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALIFRASRVSPAPTPTPTLMNFNGSNtcvESRLMSVTDLarYVDVIPWYRFGFC 144
689*********************************************999999544444433333443333442444455555599************* PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..vakrledl.. 189
+aN aI++a+++ ++vHi+Df+is+++QWp+L++aL++Rp+gpps+Ri + + ++ + ++++g L+kfA++ ++pf+fn++ +++ +++
Cla007701 145 AANIAIYKAIQRYQKVHILDFSISHCMQWPTLIDALSKRPQGPPSVRISVPSFRPPVpplLNIPTHQIGLCLTKFANSKNIPFQFNLFpyNHNNSNNIff 244
*************************************************988766667789999***********************9874444444445 PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
++++L ++++Eal++n+++ l ++ +++ +++ +d+++k+ ksl+P+++vvv+++++++++s++ r++ +++y++ fd+le+ l +es +r +E+
Cla007701 245 DPSNLTLQENEALVINCQHWLRYISNDDDDVDClsSKDNFIKATKSLNPRIIVVVDEDSNMTDSSLASRITTCFNYFWIPFDALETFLTKESAQRLEYEA 344
************************977655543339**************************************************************** PP
GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+g++i+n++ eg++r+er e k +er+++ G+ ++p+ +++a+++k+ll++ + g+ ++ e+++lvl+Wk+++ v+v+aW
Cla007701 345 D-VGQRIENIIGFEGNQRVERLEGCVKVSERMRDGGYLNAPFCDDVADEVKALLAEQA-SGWGMKREEDALVLTWKGHNSVFVTAW 428
*.9*****************************************************99.88999999******************* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.689 | 18 | 410 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 6.1E-85 | 45 | 428 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 437 aa Download sequence Send to blast |
MRAELREKTS SISVHNSTIL NRAHNSSLSG ALKGCLGSLD GGCIEKLLVH CASALESHDV 60 TLAQQVMWVL NNVASPVGDP NQRLTSWFLR ALIFRASRVS PAPTPTPTLM NFNGSNTCVE 120 SRLMSVTDLA RYVDVIPWYR FGFCAANIAI YKAIQRYQKV HILDFSISHC MQWPTLIDAL 180 SKRPQGPPSV RISVPSFRPP VPPLLNIPTH QIGLCLTKFA NSKNIPFQFN LFPYNHNNSN 240 NIFFDPSNLT LQENEALVIN CQHWLRYISN DDDDVDCLSS KDNFIKATKS LNPRIIVVVD 300 EDSNMTDSSL ASRITTCFNY FWIPFDALET FLTKESAQRL EYEADVGQRI ENIIGFEGNQ 360 RVERLEGCVK VSERMRDGGY LNAPFCDDVA DEVKALLAEQ ASGWGMKREE DALVLTWKGH 420 NSVFVTAWVT NDEIGVA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_B | 7e-52 | 45 | 428 | 88 | 472 | Protein SHORT-ROOT |
| 5b3h_B | 2e-52 | 45 | 428 | 34 | 418 | Protein SHORT-ROOT |
| 5b3h_E | 2e-52 | 45 | 428 | 34 | 418 | Protein SHORT-ROOT |
| Search in ModeBase | ||||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | LN681792 | 1e-152 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
| GenBank | LN713255 | 1e-152 | LN713255.1 Cucumis melo genomic chromosome, chr_1. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004144576.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
| TrEMBL | A0A0A0K3M7 | 0.0 | A0A0A0K3M7_CUCSA; Uncharacterized protein | ||||
| STRING | XP_004144576.1 | 0.0 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF10074 | 31 | 42 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G49950.1 | 1e-114 | GRAS family protein | ||||




