PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007716
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 60aa    MW: 6992.85 Da    PI: 6.7766
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007716genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+W++eEde+l+ +v+q+G  +W+  +++
        Cla007716 14 KGAWSAEEDEKLKAYVQQHGHCNWRELPKY 43
                     79***********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-12851IPR009057Homeodomain-like
PROSITE profilePS512949.922960IPR017930Myb domain
SuperFamilySSF466891.0E-91050IPR009057Homeodomain-like
PfamPF002495.8E-91443IPR001005SANT/Myb domain
CDDcd001671.81E-61643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MVRAPFYDEN GVKKGAWSAE EDEKLKAYVQ QHGHCNWREL PKYAVFSHKV DYMSCALDSQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817923e-39LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132553e-39LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901712.14e-24PREDICTED: myb-related protein Myb4-like isoform X1
RefseqXP_022135702.12e-23transcription factor WER-like
TrEMBLA0A1S4E0E68e-23A0A1S4E0E6_CUCME; myb-related protein Myb4-like isoform X1
STRINGXP_008455365.14e-22(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.11e-15myb domain protein 92