PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla007761

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 246aa MW: 28331.7 Da PI: 9.5681

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla007761	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.8	8.4e-32	169	227	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Cla007761 169 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHS 227 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-33	154	227	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-28	161	228	IPR003657	WRKY domain
PROSITE profile	PS50811	29.126	164	229	IPR003657	WRKY domain
SMART	SM00774	2.7E-35	169	228	IPR003657	WRKY domain
Pfam	PF03106	1.7E-24	170	226	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGSKSQVLLN PQALFEDHQD HEVAANSQMG FFNFPSNLTF LQLPSIPQTH SPSPPFDPPN 60 FSISSNNTNN NNNNSNSNLN ETLLSSSLLP LKPSLSYEFA PQHLLSLQTS TPNLWPWGEI 120 GEKLMNGKRS NNENHQLGVS TMKMKKMKGR RKVREPRFSF KTMSDVDVLD DGYKWRKYGQ 180 KVVKNTQHPR SYYRCTQDHC RVKKRVERLA EDPRMVITTY EGRHVHSPSH DSEDSEAQTH 240 LNNFFW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	161	226	9	74	Probable WRKY transcription factor 4
2lex_A	6e-26	161	226	9	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984038	0.0	GU984038.1 Cucumis sativus WRKY protein (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457912.1	1e-143	PREDICTED: probable WRKY transcription factor 13 isoform X1
TrEMBL	A0A1S3C6R7	1e-142	A0A1S3C6R7_CUCME; probable WRKY transcription factor 13 isoform X1
STRING	XP_008457912.1	1e-143	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4079	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-50	WRKY DNA-binding protein 13