PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007790
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 490aa    MW: 56129.6 Da    PI: 5.3255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007790genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2946130187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+++e++aL+++r++m++++r+++lk+plWeevs+k++e g++r++k+Ckek+en+ k++k++k+g++++   + ++++yf+qlea
  Cla007790  46 RWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYNRNAKKCKEKFENIYKYHKRTKDGRSGK--ANGKNYRYFEQLEA 130
                8********************************************************************96..55668*******85 PP
2trihelix101.56.6e-32327412187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k+e+ aLi++r++++ +++++  k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  Cla007790 327 RWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRSAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCPYFQQLDA 412
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002543105IPR001005SANT/Myb domain
CDDcd122036.60E-2245110No hitNo description
PfamPF138373.3E-1945131No hitNo description
PROSITE profilePS500907.22445103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-5320383IPR009057Homeodomain-like
PROSITE profilePS500907.666320384IPR017877Myb-like domain
SMARTSM007171.2E-4324386IPR001005SANT/Myb domain
PfamPF138377.0E-23326413No hitNo description
CDDcd122037.89E-24326391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MLEISPSPEN STAVAAAVVN RAAEEDGAAA SAGFSEDADR NWPGNRWPRE ETMALLKVRS  60
SMDTAFRDAS LKAPLWEEVS RKLAELGYNR NAKKCKEKFE NIYKYHKRTK DGRSGKANGK  120
NYRYFEQLEA LDNNPLLPSQ ADSMEEIPRI IPNNVVHNAI PCSVVNPSAN FVETTTTSIS  180
TSTTSCSSKE SGGTRKKKRK FVEFFERLMN EVIEKQEKLQ KKFVEALEKC EVERLAREEE  240
WKMQELARIK KERERLNQER SIAAAKDAAV LSFLKVFSEQ VGTVQFPENL ISVENLTEKQ  300
DDGNVDRNTS TQENINNGNS NQISSSRWPK EEIDALIQLR TNLQMKYQDN GPKGPLWEEI  360
SLAMKKLGYD RSAKRCKEKW ENINKYFKRV KESNKKRPED SKTCPYFQQL DALYKQKSKK  420
IVNNPANPNY ELKPEELLMH MMGGQEESHQ PESATDDGEA ENADQNQEDE DEDEDYQIVA  480
NNNRNQMEVN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147355.20.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-116TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0A0LK120.0A0A0A0LK12_CUCSA; Uncharacterized protein
STRINGXP_004169667.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-123Trihelix family protein