PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008060
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 295aa    MW: 32809.6 Da    PI: 6.6605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008060genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-05132151120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  Cla008060 132 FSCPVCFKTFNRYNNMQMHM 151
                89*****************9 PP
2zf-C2H214.88e-05216238123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Cla008060 216 FMCRKCGKAFAVRGDWRTHEKNC 238
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-5128154No hitNo description
PROSITE profilePS501579.64132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-6132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-6198236No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808216236IPR007087Zinc finger, C2H2
SMARTSM0035549216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSHNCFSCPY SNPHPPLPPS PPLREALPLL GLMSPPEQRQ EQEEEDDGGG GRDEEESVTV  60
ALHIGLPSPS AAEIASLMCG SSSEIDHVGD GDHSNSNNNN QDHDLGQSTK TLIKGQYWIP  120
TPSQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC  180
CAPGCRNNID HPRAKPLKDF RTLQTHYKRK HGLKPFMCRK CGKAFAVRGD WRTHEKNCGK  240
LWYCICGSDF KHKRSLKDHV KAFGNDHAAY GGGGIDGFGD EEDEPASEVE QDNDE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818821e-162LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132621e-162LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022967846.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3B5891e-179A0A1S3B589_CUCME; zinc finger protein WIP2
STRINGXP_008442237.11e-180(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]