PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008250

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 341aa MW: 37240.1 Da PI: 9.3109

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008250	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	87	146	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Cla008250 87 ETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNK 146 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-32	74	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-33	89	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	90	144	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	92	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDFSSVPIYL DPPPNWHQQS NHHHHHHPQI SSNNNGSPQH QHHLLSLPTQ QLSSSPLSHV 60 GGGGGVSSIR RGSMADRARM ANVPLPETAL KCPRCDSTNT KFCYFNNYSL SQPRHFCKSC 120 RRYWTRGGAL RNVPVGGGCR RNKKNKTRRS KSPAAAPAGN ETQVMNNNSN SPTTTTIPLH 180 SSAENIIGHL QPQHPHLSFM ASLNNFSRYG TTSLGLNFNE IQAQGNDIGN GALLNHHLWR 240 GSQNFPLSGG LETPPGLYPF QISGGDGDDN TTNSILTPNS RATHLPPVKI EETQVLNLLK 300 SSNLGINNSE NNQFWSNGNG WTDLSAISST SSGHISCDFN H

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681926	0.0	LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457487.1	0.0	PREDICTED: dof zinc finger protein DOF3.6
TrEMBL	A0A1S3C6X6	0.0	A0A1S3C6X6_CUCME; dof zinc finger protein DOF3.6
STRING	XP_008457487.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	3e-40	Dof family protein