PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008279
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 242aa    MW: 28069.6 Da    PI: 6.5135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008279genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
        Cla008279 10 KGPWTEQEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding52.61e-1663108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
        Cla008279  63 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.204557IPR017930Myb domain
SuperFamilySSF466891.09E-287104IPR009057Homeodomain-like
SMARTSM007171.2E-14959IPR001005SANT/Myb domain
PfamPF002493.8E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-191164IPR009057Homeodomain-like
CDDcd001671.03E-101257No hitNo description
PROSITE profilePS5129425.14358112IPR017930Myb domain
SMARTSM007173.3E-1662110IPR001005SANT/Myb domain
PfamPF002491.3E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2365110IPR009057Homeodomain-like
CDDcd001671.57E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVVQEESIRK GPWTEQEDFQ LVCFVGLFGD RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG  60
LKRGKMTPHE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNFWRTHMRK VAQEKKKAVV  120
VSPLSSSTVD SVPTTIEIGE ESFYDTGGNP SDYLGKHKEE EDDQKGCCYT MDDIWRDIDD  180
QNTNVMKPFC DEQQFYSNFS CGPVVSPPWE YGQYSAWKVG EEDNKIFTAM NIYDHGEAVA  240
LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-27101104103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-261011058157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-261011058157MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-26101104103C-Myb DNA-Binding Domain
1msf_C1e-26101104103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819264e-57LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132664e-57LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457537.11e-141PREDICTED: transcription factor MYB59-like
SwissprotQ4JL848e-85MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A1S3C5C21e-139A0A1S3C5C2_CUCME; transcription factor MYB59-like
STRINGXP_008457537.11e-140(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.35e-82myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]