PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008320
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 289aa    MW: 31477.5 Da    PI: 10.2753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008320genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07901231447
                      HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +a ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
        Cla008320  90 NASEKVGKGDWRGISRNFVKTRTPTQVASHAQKY 123
                      677899***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.0027589124No hitNo description
TIGRFAMsTIGR015571.7E-889126IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.1E-491123IPR009057Homeodomain-like
SuperFamilySSF466897.67E-891129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPMPADGAAQ MDAAGVTKEF MLFGVRVMVD PMRKRTISLS MSILLKLPLM TIAATVRVLS  60
LPPTGRKIPL PVTLLRMMPF PIPVGIASVN ASEKVGKGDW RGISRNFVKT RTPTQVASHA  120
QKYFLRRSNL NRRRRRSSLF DITTDTVKVA AEEEQIQVQD NSSQLQSLLP PPPPETCNVN  180
GYHPVMPTFP LSVCPAMLPV PIPMENPTLT HESLETDTSS KQLHPLASEV LPFSATTPEF  240
NLNSKPTFNS GALSLNLALP SDSTNSPMKH PAFQGISNIS SGDNIISVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819328e-93LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132668e-93LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152452.11e-102PREDICTED: transcription factor MYB1R1
TrEMBLA0A0A0LQS91e-100A0A0A0LQS9_CUCSA; Uncharacterized protein
STRINGXP_004157805.11e-101(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-25MYB_related family protein