PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008451
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 381aa    MW: 43707.5 Da    PI: 6.0133
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008451genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.27.2e-7373702373
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                ++lLl++Aea++++++ l+++l+++l++l     g  ++++la +ft++L+ + ++     y++l++  +  k s ++++a+++++++sP++kf+h+taN
  Cla008451   7 TDLLLAAAEAIEAQNHLLVSNLIEKLKNLlLYDMGsYSFNQLAWFFTQGLHYKTLD-----YNILAADYQI-KISNNSMSAFQMLQQLSPYIKFAHFTAN 100
                689*************************9644445479******************.....7777666664.5688999********************* PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                qaIlea+ege+ +HiiDfdi++G+QWp+L+  La++ ++  slR+T++++ ++++++ +e+tg+rL++fA++++ pf f+ +  ++ ++  +e ++v  g
  Cla008451 101 QAILEAAEGEKLIHIIDFDIMEGIQWPPLMADLAAK-KEVCSLRLTAIVQDNESERKIIEQTGRRLSEFAKSINFPFIFDQMGIEKEDS--FEGIQV-LG 196
                ***********************************8.5569*********9999**************************974444433..455544.49 PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsleaklp..reseerikvErell 290
                E+++ n++   h++l  s +  s+ +++L+ v +lsPk vv+ve+e+   ++e      sF+e f+ea++++sal ds+   ++   e+  ++++E++ l
  Cla008451 197 ETVIANCSGIFHHIL--SYKNLSKLETFLDGVSKLSPKCVVLVEEELFKvTKElgpqpmSFVEFFFEAFHHFSALSDSFLRCFSgvYENGFKQVMEEF-L 293
                ***************..56666669*********************6553555778888*******************95544411455788888888.* PP

       GRAS 291 greivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                g +i + v++   +      ++  W++++++  G+k++p+s+++ +qak+l++ + +d + v++e+ sl l+Wk+rpL +++ W
  Cla008451 294 GTRILESVTQFPCD------KKYVWKSAFDHlKGYKKIPFSSFNCSQAKYLISLFRGD-FWVQHEKCSLSLCWKSRPLCTATIW 370
                ********998888......7789*****9868***********************88.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.6481352IPR005202Transcription factor GRAS
PfamPF035142.5E-707370IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEEESLTDLL LAAAEAIEAQ NHLLVSNLIE KLKNLLLYDM GSYSFNQLAW FFTQGLHYKT  60
LDYNILAADY QIKISNNSMS AFQMLQQLSP YIKFAHFTAN QAILEAAEGE KLIHIIDFDI  120
MEGIQWPPLM ADLAAKKEVC SLRLTAIVQD NESERKIIEQ TGRRLSEFAK SINFPFIFDQ  180
MGIEKEDSFE GIQVLGETVI ANCSGIFHHI LSYKNLSKLE TFLDGVSKLS PKCVVLVEEE  240
LFKVTKELGP QPMSFVEFFF EAFHHFSALS DSFLRCFSGV YENGFKQVME EFLGTRILES  300
VTQFPCDKKY VWKSAFDHLK GYKKIPFSSF NCSQAKYLIS LFRGDFWVQH EKCSLSLCWK  360
SRPLCTATIW VPKSGKLKSF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-341437427382Protein SCARECROW
5b3h_A3e-341437426381Protein SCARECROW
5b3h_D3e-341437426381Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148670.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A0A0KKU80.0A0A0A0KKU8_CUCSA; Uncharacterized protein
STRINGXP_004165446.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-35GRAS family protein