PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008480
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 184aa    MW: 21088.6 Da    PI: 9.7179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008480genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.82.8e-10163184122
                ---SS-EEEEEEE--TT-SS-E CS
       WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                ldDgy+WrKYGqK+vk++ +pr
  Cla008480 163 LDDGYKWRKYGQKVVKNTLHPR 184
                59*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-11148184IPR003657WRKY domain
SuperFamilySSF1182902.62E-9155184IPR003657WRKY domain
PROSITE profilePS5081113.115158184IPR003657WRKY domain
PfamPF031061.1E-6164184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRSSASEEEI MVSLFQADQE AAAVNAAAIT TNFISFPEAN NNNNNNNVVV QQSLKPFSFS  60
TQHYFCQQQQ QSLFPFFFPS TTAPSNLLSS HNTPSSSSLW DEKERFMRGR NNGIGNYVGD  120
DDNDDDCKPR LRVSTMKMKR IKGRKKVREP RFSFKTMTDV DVLDDGYKWR KYGQKVVKNT  180
LHPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818752e-89LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132622e-89LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440122.14e-66PREDICTED: probable WRKY transcription factor 12 isoform X2
TrEMBLA0A1S3B0E11e-64A0A1S3B0E1_CUCME; probable WRKY transcription factor 12 isoform X2
STRINGXP_008440122.12e-65(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.15e-24WRKY DNA-binding protein 13