PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008537

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 364aa MW: 40842.9 Da PI: 6.8721

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008537	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	208	227	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cla008537 208 FSCPLCFKTFNRYNNMQMHM 227 89*****************9 PP
2	zf-C2H2	15.4	5.4e-05	292	314	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F + + ++H +++ Cla008537 292 FTCRKCGKAFAVRGDWRTHEKNC 314 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.61	208	230	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-5	208	227	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	208	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	210	230	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	255	287	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.66E-6	273	312	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.8E-6	279	312	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.162	292	319	IPR007087	Zinc finger, C2H2
SMART	SM00355	38	292	312	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	150	318	341	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTDPYPINNN GSFGNLYPLH HYFSSSSSSS SSSNSYSPYY DHPFSLSYSN DNNNNNNTLM 60 TSPHYPSSSP QVLLPLLSLS PARVAQDHDN ENHSFSKDLI KNFCNPAEDD VDNDNDDDDD 120 QSVTVALHLG LPTPSSSSSN SDLILRLSST EISDQDDHHQ LEDQVPNPNY SSSNSNIITS 180 AATTTTGLNK GQYWIPTPAQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPQS 240 LRGTQPTAML RLPCYCCAVG CRNNIDHPRS KPLKDFRTLQ THYKRKHGMK PFTCRKCGKA 300 FAVRGDWRTH EKNCGKLWHC TCGSDFKHKR SLKDHIKAFG HGHAAYGIDH SFEEDDEPAS 360 EIET

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTDPYPINNN GSFGNLYPLH HYFSSSSSSS SSSNSYSPYY DHPFSLSYSN DNNNNNNTLM  60
TSPHYPSSSP QVLLPLLSLS PARVAQDHDN ENHSFSKDLI KNFCNPAEDD VDNDNDDDDD  120
QSVTVALHLG LPTPSSSSSN SDLILRLSST EISDQDDHHQ LEDQVPNPNY SSSNSNIITS  180
AATTTTGLNK GQYWIPTPAQ ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPQS  240
LRGTQPTAML RLPCYCCAVG CRNNIDHPRS KPLKDFRTLQ THYKRKHGMK PFTCRKCGKA  300
FAVRGDWRTH EKNCGKLWHC TCGSDFKHKR SLKDHIKAFG HGHAAYGIDH SFEEDDEPAS  360
EIET

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ870274	1e-158	GQ870274.1 Cucumis melo WIP1 (WIP1) gene, complete cds.
GenBank	GQ870275	1e-158	GQ870275.1 Cucumis melo transposon Gyno-hAT putative transposase gene, complete cds; and WIP1 (WIP1) gene, complete cds.
GenBank	LN681842	1e-158	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-158	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022995107.1	1e-162	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-125	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2I4DJY3	1e-154	A0A2I4DJY3_JUGRE; zinc finger protein WIP2-like
STRING	XP_004142226.1	1e-152	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]