PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008573

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HB-other

Protein Properties

Length: 544aa MW: 61270.2 Da PI: 8.5793

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008573	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.5e-20	57	112	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t++ql +Le+++++++yp++e++ +LA++lgLte+q++ WF+ rR k+k+ Cla008573 57 KKRKLKTPTQLVALEKFYNEHKYPTEEMKSQLAEQLGLTEKQISGWFCHRRLKDKR 112 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-22	41	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	53	113	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	55	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-18	55	116	IPR009057	Homeodomain-like
CDD	cd00086	5.39E-18	57	112	No hit	No description
Pfam	PF00046	3.1E-17	57	112	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MDDNFHAHSI NVLAMATFPF VFKILPLTLA HPFIKVNEEL GNAMHSEENK DSTEKNKKRK 60 LKTPTQLVAL EKFYNEHKYP TEEMKSQLAE QLGLTEKQIS GWFCHRRLKD KRFCETYTSV 120 RQDRSSGVIQ DHGSGLAQDS CGSTKNGDYW HIDPREVESQ KPHGHELATD NVLERRSQYT 180 ENVSNMENTS SESSSSLKDR LLSQSENPYD TEVSRYLTHE GAIPPSNPKA LSSLRYKPSG 240 YLKVKGEVEN AAITAVKRQL GVQYREDGPP LGVEFQPLPP GAFESPAKGP SHDSYYVGNP 300 LLPRSPDILT MKKQRALGSR YEVHSSNMSS QDSYREEVAP TGTTGRPECQ EKNSVYQLKK 360 SSNYYNKSDP FPQQNSPLNM YEESGGLTFS SSSKRDHKMN PSYNIPRSRT DSVSNNHGSY 420 SSKVASEQID MQLHNHGSVG SKSFYRSGYL DYNPKKMPKE MFNGEEKAVN ESSDPVRGKI 480 PATNELAVAN RCQLDFPRSD YAAKASFSEK SGRKSHTRRS VQVTVASSMQ IIFHIHIEVL 540 IFIS

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MDDNFHAHSI NVLAMATFPF VFKILPLTLA HPFIKVNEEL GNAMHSEENK DSTEKNKKRK  60
LKTPTQLVAL EKFYNEHKYP TEEMKSQLAE QLGLTEKQIS GWFCHRRLKD KRFCETYTSV  120
RQDRSSGVIQ DHGSGLAQDS CGSTKNGDYW HIDPREVESQ KPHGHELATD NVLERRSQYT  180
ENVSNMENTS SESSSSLKDR LLSQSENPYD TEVSRYLTHE GAIPPSNPKA LSSLRYKPSG  240
YLKVKGEVEN AAITAVKRQL GVQYREDGPP LGVEFQPLPP GAFESPAKGP SHDSYYVGNP  300
LLPRSPDILT MKKQRALGSR YEVHSSNMSS QDSYREEVAP TGTTGRPECQ EKNSVYQLKK  360
SSNYYNKSDP FPQQNSPLNM YEESGGLTFS SSSKRDHKMN PSYNIPRSRT DSVSNNHGSY  420
SSKVASEQID MQLHNHGSVG SKSFYRSGYL DYNPKKMPKE MFNGEEKAVN ESSDPVRGKI  480
PATNELAVAN RCQLDFPRSD YAAKASFSEK SGRKSHTRRS VQVTVASSMQ IIFHIHIEVL  540
IFIS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140200.1	0.0	PREDICTED: uncharacterized protein LOC101207235 isoform X1
TrEMBL	A0A0A0KH14	0.0	A0A0A0KH14_CUCSA; Uncharacterized protein
STRING	XP_004156045.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-83	HB-other family protein