PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008633

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 203aa MW: 23631.5 Da PI: 9.8977

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008633	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.8	1.6e-43	16	147	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk 95 pGfrF Pt+eelv++yL++++eg++ ++++vi+ vdiy +eP +L + +++ ++++w+fF+k+++++a+g r+nr+t+ sgyWkatg+ v+s+ Cla008633 16 LPGFRFFPTEEELVSFYLHNQLEGRRKDIHRVIPVVDIYAIEPFNLSRysgeRCRRDNEQWFFFVKQQEREARGGRANRTTSsgSGYWKATGSPAYVYSS 115 69*************************99***********8445666666888****************8876689********** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g+kkt+vfy+g+ap+g+kt+W m+ey+ Cla008633 116 HNKVIGVKKTMVFYRGKAPTGNKTKWKMNEYK 147 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-44	14	180	IPR003441	NAC domain
PROSITE profile	PS51005	44.659	15	181	IPR003441	NAC domain
Pfam	PF02365	2.2E-22	17	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MEEYQVIGND IEDEILPGFR FFPTEEELVS FYLHNQLEGR RKDIHRVIPV VDIYAIEPFN 60 LSRYSGERCR RDNEQWFFFV KQQEREARGG RANRTTSSGS GYWKATGSPA YVYSSHNKVI 120 GVKKTMVFYR GKAPTGNKTK WKMNEYKAIQ DHIPPHSHSP SSSTPTPQLR HEFSLCRVYV 180 VSGSFRAFDR RPLQAHNSST HIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-27	17	179	22	166	NAC domain-containing protein 19
3swm_B	2e-27	17	179	22	166	NAC domain-containing protein 19
3swm_C	2e-27	17	179	22	166	NAC domain-containing protein 19
3swm_D	2e-27	17	179	22	166	NAC domain-containing protein 19
3swp_A	2e-27	17	179	22	166	NAC domain-containing protein 19
3swp_B	2e-27	17	179	22	166	NAC domain-containing protein 19
3swp_C	2e-27	17	179	22	166	NAC domain-containing protein 19
3swp_D	2e-27	17	179	22	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	7e-80	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	7e-80	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449583.1	1e-122	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-81	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3BMD5	1e-121	A0A1S3BMD5_CUCME; NAC domain-containing protein 90
STRING	XP_008449583.1	1e-122	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-81	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]