PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla008635

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YB

Protein Properties

Length: 161aa MW: 17972 Da PI: 4.8097

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla008635	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	33.1	1.4e-10	11	107	7	94
NF-YB 7 flPianvsrimkkvlPanak...is..kdaketvqecvsefisfvt....seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +lP + v r++k+ l + ++ is kd+ e + fi +++ s ++d c++ kr+ti+++d+l al ++ f + v plkv l+++r + Cla008635 11 ELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSatslSRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKN 107 57888889999998876443222551155555555666779999872223467899*************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-28	11	149	IPR009072	Histone-fold
Pfam	PF00808	4.9E-7	11	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.62E-21	12	125	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MEKKVGAGIE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATSL 60 SRSNDICNES KRQTIKAEDV LKALEDMEFP ELVRPLKVSL NEFRRKNAGK KAAASREKEV 120 KKKRKVEEPT AEGTDGDSND GVGNEDNDEA EDEDEIGASD N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	124	RRKNAGKKAAASREKEVKKKRK
2	115	124	REKEVKKKRK
3	120	125	KKKRKV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-74	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-74	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022958709.1	2e-78	DNA polymerase epsilon subunit 3
Refseq	XP_022958710.1	2e-78	DNA polymerase epsilon subunit 3
Refseq	XP_023533668.1	1e-78	DNA polymerase epsilon subunit 3
Refseq	XP_023533669.1	1e-78	DNA polymerase epsilon subunit 3
TrEMBL	A0A1S3BNA4	5e-75	A0A1S3BNA4_CUCME; DNA polymerase epsilon subunit D
STRING	XP_008449581.1	8e-76	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-37	nuclear factor Y, subunit B11